WorkflowHub project

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Project pages for developing and running WorkflowHub, a registry of scientific workflows.

View the Project on GitHub workflowhub-eu/about

WorkflowHub Outreach and Publications

Feel free to add to this page, either edit and raise pull request or raise issue using your GitHub account.

Cite WorkflowHub

Carole Goble; Stian Soiland-Reyes; Finn Bacall; Stuart Owen; Alan Williams; Ignacio Eguinoa; Bert Droesbeke; Simone Leo; Luca Pireddu; Laura Rodríguez-Navas; José Mª Fernández; Salvador Capella-Gutierrez; Hervé Ménager; Björn Grüning; Beatriz Serrano-Solano; Philip Ewels; Frederik Coppens (2021):
Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory.
Manuscript in preparation https://doi.org/10.5281/zenodo.4605654

Posters

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodriguez-Navas, José M. Fernández, Salvador Capella-Gutierrez, Michael R. Crusoe, Björn Grüning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens (2021):
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects.
BOSC 2021, [poster], [abstract]

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodriguez-Navas, Kiran K Telukunta, Flora D'Anna, José M. Fernández, Alban Gaignard, Ambarish Kumar, Maciek Bak, Ivan Topolsky, Salvador Capella-Gutierrez, Michael R. Crusoe and Frederik Coppens (2020):
The Workflow Hub: A Registry of Life Science Workflows.
ISMB 2020 [video/slides], presented by Ambarish Kumar.

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Flora D'Anna, Hervé Ménager, Laura Rodriguez-Navas, José M. Fernández, Ivan Topolsky, Alban Gaignard, Björn Grüning, Simone Leo, Luca Pireddu, Phil Ewels Maciek Bak, Salvador Capella-Gutierrez, Michael R. Crusoe and Frederik Coppens (2020):
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects.
International FAIR Convergence Symposium, 2020-11-27 / 2020-12-04.

Recent publications, presentations, citations

Carole Goble (2021): FAIR Computational Workflows. JOBIM 2021 (Journées Ouvertes en Biologie, Informatique et Mathématiques), 2021-07-08

Stian Soiland-Reyes (2021): RO-Crate, workflows and FAIR Digital Objects FAIR Digital Object Forum, CWFR & FDO SEM meeting, 2021-07-02 [video recording], [slides] https://doi.org/10.5281/zenodo.5060283

Laura Rodríguez-Navas (2021): WfExS: a software component to enable the use of RO-Crate in the EOSC-Life collaboratory. FAIR Digital Object Forum, CWFR & FDO SEM meeting, 2021-07-02 [video recording], [slides]

Carole Goble (2021): FAIR Computational Workflows: the what, why how and who. ICTESSH 2021 (International Conference on ICT enhanced Social Sciences and Humanities 2021), 2021-06-30

Carole Goble (2021): The EOSC-Life Workflow Collaboratory. EOSC Symposium 2021, 2021-06-17 [video recording] [slides]

Laura Rodríguez-Navas (2021): WfExS: a software component to enable the use of RO-Crate in the EOSC-Life tools collaboratory. EOSC Symposium 2021, 2021-06-17 [video recording] [slides]

Stian Soiland-Reyes (2021): Capturing Just Enough Data, Software and Metadata with RO-Crate. Dataverse community meeting 2021, Software Metadata and Containerization, 2021-06-17. https://doi.org/10.5281/zenodo.4973678

Carole Goble, Stian Soiland-Reyes, Stuart Owen, Frederik Coppens (2021): Towards FAIR Workflows. _GO FAIR US webinar: FAIR Workflows, 2021-06-16 [video recording] [slides]

Carole Goble (2021): FAIR Workflows and Research Objects get a Workout. Dataverse community meeting 2021, keynote, 2021-06-15

Stian Soiland-Reyes (2021): Capturing workflow life cycle with RO-Crate. ELIXIR All Hands 2021, Workshop: Workflow Life Cycle, 2021-06-11 https://doi.org/10.5281/zenodo.4926088

Stian Soiland-Reyes (2021): Data provenance with RO-Crate. EOSC-Life retreat 2021, Provenance of tools and workflows; FAIRification of workflows, 2021-05-19.

Carole Goble, Stian Soiland-Reyes (2021): RO-Crate: A framework for packaging research products into FAIR Research Objects.
RDA IG Data Fabric: FAIR Digital Objects 2021-02-25. [Video recording] [slides]

Stian Soiland-Reyes, Ignacio Eguinoa (2020):
Packaging workflows with RO-Crate.
Workshop on FAIR Computational Workflows, 19th European Conference on Computational Biology (ECCB 2020).
https://doi.org/10.5281/zenodo.4011999

Simone Leo, Salvador Capella-Gutierrez (2020):
Testing workflows: Life Monitor and OpenEBench.
Workshop on FAIR Computational Workflows, 19th European Conference on Computational Biology (ECCB 2020).

See also:

The below logos can be used by for application, websites, posters, slides etc. for work that use, implement or support WorkflowHub and Workflow RO-Crate, linking to https://workflowhub.eu/. To ask permission for any other use, raise an issue.

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