Workflow RO-Crate profile

Items that reference this one
@id	./
name [?]	Workflow RO-Crate profile
@type	Dataset
description [?]	This is the Profile Crate for Workflow RO-Crate. Workflow RO-Crates are a specialization of RO-Crate for packaging an executable workflow with all necessary documentation. It is aligned with, and intends to strictly extend, the more general Bioschemas ComputationalWorkflow profile. WorkflowHub uses Workflow RO-Crates as an exchange format for users to upload a packaged workflow.
datePublished [?]	2021-06-23T18:43:00.000Z
author [?]	Finn Bacall
contactPoint [?]	Comments on Workflow RO-Crate spec (GitHub)
hasPart [?]	Workflow RO-Crate profile description RO-Crate JSON-LD Context licenses ro-crate-py WfExS-backend ZIP Format WorkflowHub ComputationalWorkflow Formal Parameter HowTo ImageObject languages Example RO-Crate following this profile CheckMyCrate profile for Workflow RO-Crate
identifier [?]
license [?]	BSD 3-Clause "New" or "Revised" License
publisher [?]	WorkflowHub project
version [?]	0.2.0
workExample [?]	Example RO-Crate following this profile
about [?]	ro-crate-metadata.json
conformsTo [?]	example/ro-crate-metadata.json

Go to: Finn Bacall

Items that reference this one
@id
name [?]	Finn Bacall
@type	Person
author [?]	Workflow RO-Crate profile Workflow RO-Crate profile description

Go to: Comments on Workflow RO-Crate spec (GitHub)

Items that reference this one
@id
name [?]	Comments on Workflow RO-Crate spec (GitHub)
@type	ContactPoint
url [?]
contactPoint [?]	Workflow RO-Crate profile

⬇️ Download: Workflow RO-Crate profile description

Items that reference this one
@id	index.html
name [?]	Workflow RO-Crate profile description
@type	File
author [?]	Finn Bacall Alan R Williams Stuart Owen
about [?]	./
dateModified [?]	2021-06-24T16:09:24.045Z
hasPart [?]	Workflow RO-Crate profile

Go to: RO-Crate JSON-LD Context

Items that reference this one
@id
name [?]	RO-Crate JSON-LD Context
@type	CreativeWork
encodingFormat [?]	application/ld+json JSON-LD Context
version [?]	1.1.1
hasPart [?]	Workflow RO-Crate profile

licenses

Items that reference this one
@id	licenses/
name [?]	licenses
@type	Dataset
description [?]	Although the Crate's license field should be a URL, WorkflowHub currently accepts a string from the 'identifier' field of one of the following licenses:
hasPart [?]	Academic Free License 3.0 -to- NASA Open Source Agreement 1.3 Academic Free License 3.0 Adaptive Public License 1.0 Apache Software License 1.1 Apache Software License 2.0 Apple Public Source License 2.0 Artistic License 2.0 Attribution Assurance Licenses BSD 2-Clause "Simplified" or "FreeBSD" License (BSD-2-Clause) BSD 3-Clause "New" or "Revised" License (BSD-3-Clause) BitTorrent Open Source License 1.1 Boost Software License 1.0 CC0 1.0 CNRI Python License CUA Office Public License 1.0 CeCILL License 2.1 Common Development and Distribution License 1.0 Common Public Attribution License 1.0 Computer Associates Trusted Open Source License 1.1 (CATOSL-1.1) EU DataGrid Software License Eclipse Public License 1.0 Educational Community License 2.0 Eiffel Forum License 2.0 Entessa Public License European Union Public License 1.1 Fair License Frameworx License 1.0 GNU Affero General Public License v3 GNU General Public License 2.0 GNU General Public License 3.0 GNU Lesser General Public License 2.1 GNU Lesser General Public License 3.0 Historical Permission Notice and Disclaimer IBM Public License 1.0 IPA Font License ISC License Intel Open Source License LaTeX Project Public License 1.3c Lucent Public License ("Plan9") 1.0 Lucent Public License 1.02 MIT License MITRE Collaborative Virtual Workspace License (CVW License) Microsoft Public License Microsoft Reciprocal License MirOS Licence Motosoto License Mozilla Public License 1.0 Mozilla Public License 1.1 Mozilla Public License 2.0 Multics License NASA Open Source Agreement 1.3 NTP License -to- No license - no permission to use unless the owner grants a licence NTP License Naumen Public License Nethack General Public License Nokia Open Source License Non-Profit Open Software License 3.0 OCLC Research Public License 2.0 Open Font License 1.1 Open Government Licence 1.0 (United Kingdom) Open Government Licence 2.0 (United Kingdom) Open Government Licence 3.0 (United Kingdom) Open Group Test Suite License Open Software License 3.0 PHP License 3.0 PostgreSQL License Python License 2.0 Q Public License 1.0 RealNetworks Public Source License 1.0 Reciprocal Public License 1.5 Ricoh Source Code Public License Simple Public License 2.0 Sleepycat License Sun Industry Standards Source License 1.1 Sun Public License 1.0 Sybase Open Watcom Public License 1.0 University of Illinois/NCSA Open Source License Unlicense Vovida Software License 1.0 W3C License X.Net License Zope Public License 2.0 wxWindows Library License zlib/libpng license No license - no permission to use unless the owner grants a licence
hasPart [?]	Workflow RO-Crate profile

Go to: ro-crate-py

Items that reference this one
@id
name [?]	ro-crate-py
@type	SoftwareApplication
description [?]	Python library to create/parse RO-Crate (Research Object Crate) metadata.
identifier [?]
url [?]
version [?]	0.4.0
hasPart [?]	Workflow RO-Crate profile

Go to: WfExS-backend

Items that reference this one
@id
name [?]	WfExS-backend
@type	SoftwareApplication
description [?]	Workflow Execution Service backend
url [?]
version [?]	0.4.2
hasPart [?]	Workflow RO-Crate profile

Go to: ZIP Format

Items that reference this one
@id
name [?]	ZIP Format
@type	WebSite
conditionsOfAccess [?]	The Workflow RO-Crate must be zipped, and have the file extension .crate.zip to be recognized by WorkflowHub.
hasPart [?]	Workflow RO-Crate profile

Go to: WorkflowHub

Items that reference this one
@id
name [?]	WorkflowHub
@type	RepositoryCollection
description [?]	WorkflowHub is a registry for describing, sharing and publishing scientific computational workflows.
publisher [?]	WorkflowHub project
title [?]	WorkflowHub
hasPart [?]	Workflow RO-Crate profile

Go to: ComputationalWorkflow

Items that reference this one
@id
name [?]	ComputationalWorkflow
@type	DefinedTerm
description [?]	A computational workflow consists of an orchestrated and repeatable pattern of activity enabled by the systematic organization of resources into processes that transform materials, provide services, or process information (source Wikipedia.org). It is executed by a computational process and is thus distinct from laboratory or business workflows.
conditionsOfAccess [?]	The Crate MUST contain a data entity of type ["File", "SoftwareSourceCode", "ComputationalWorkflow"] as the Main Workflow. The Crate MUST refer to the Main Workflow via mainEntity. The Main Workflow MUST refer to its type via programmingLanguage.
termCode [?]	ComputationalWorkflow
url [?]
version [?]	1.0-RELEASE
hasPart [?]	Workflow RO-Crate profile

Go to: Formal Parameter

Items that reference this one
@id
name [?]	Formal Parameter
@type	DefinedTerm
description [?]	A FormalParameter is an identified variable used to stand for the actual value(s) that are consumed/produced by a set of steps.
termCode [?]	FormalParameter
url [?]
version [?]	1.0-RELEASE
hasPart [?]	Workflow RO-Crate profile

Go to: HowTo

Items that reference this one
@id
name [?]	HowTo
@type	DefinedTerm
description [?]	Instructions that explain how to achieve a result by performing a sequence of steps.
conditionsOfAccess [?]	The Crate COULD contain a data entity of type ["File", "SoftwareSourceCode", "HowTo"] as the Main Workflow CWL Description. If present the Main Workflow MUST refer to the Main Workflow CWL Description via subjectOf.
termCode [?]	HowTo
hasPart [?]	Workflow RO-Crate profile

Go to: ImageObject

Items that reference this one
@id
name [?]	ImageObject
@type	DefinedTerm
description [?]	An image file.
conditionsOfAccess [?]	The Crate COULD contain a Main Workflow Diagram. If Main Workflow Diagram is present, the Main Workflow MUST refer to it via image.
termCode [?]	ImageObject
hasPart [?]	Workflow RO-Crate profile

languages

Items that reference this one
@id	languages/
name [?]	languages
@type	Dataset
description [?]	WorkflowHub currently supports CWL, Galaxy, KNIME and Nextflow workflow types. To ensure compatibility, please include one of the following in the RO-Crate metadata, and refer to it from the Main Workflow's 'programmingLanguage' property
hasPart [?]	Common Workflow Language Galaxy KNIME Nextflow Snakemake
hasPart [?]	Workflow RO-Crate profile

Example RO-Crate following this profile

Items that reference this one
@id	example/
name [?]	Example RO-Crate following this profile
@type	Dataset
license [?]	CC0 1.0
subjectOf [?]	example/ro-crate-metadata.json Preview of example RO-Crate
hasPart [?]	Workflow RO-Crate profile
workExample [?]	Workflow RO-Crate profile

Go to: CheckMyCrate profile for Workflow RO-Crate

Items that reference this one
@id
name [?]	CheckMyCrate profile for Workflow RO-Crate
@type	File
encodingFormat [?]	application/json CheckMyCrate
hasPart [?]	Workflow RO-Crate profile

Go to: BSD 3-Clause "New" or "Revised" License

Items that reference this one
@id
name [?]	BSD 3-Clause "New" or "Revised" License
@type	CreativeWork
description [?]	BSD 3-Clause License Copyright (c) 2019-2020, The University of Manchester, HITS gGmbH and workflowhub.eu contributors All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
identifier [?]	BSD-3-Clause
license [?]	Workflow RO-Crate profile

Go to: WorkflowHub project

Items that reference this one
@id
name [?]	WorkflowHub project
@type	Organization
publisher [?]	Workflow RO-Crate profile WorkflowHub