WorkflowHub is a FAIR workflow registry sponsored by the European RI Cluster EOSC-Life, the European Research Infrastructure ELIXIR and multiple EU-wide projects. It is workflow management system agnostic: workflows may remain in their native repositories in their native forms.
This website describes the open source project for developing and running WorkflowHub.
For more details, see About WorkflowHub, FAIR Computational Workflows, Outreach and Publications.
For any kind of questions or suggestions on using WorkflowHub, feel free to join our community!
Documentation
- Documentation & Quick Start guide (See also Detailed Documentation)
- Guide to using WorkflowHub
- Developer docs
- Tutorial vidoes:
- Make your workflows findable and citable (slides)
- WorkflowHub ask-me-anything tutorial session
Project resources
- Production instance: https://workflowhub.eu/
- Sandbox instance: https://dev.workflowhub.eu/ (use for testing; occasionally wiped)
- Source code: seek4science/seek
- API documentation: https://workflowhub.eu/api
- Outreach and Publications
- EOSC-Life Deliverable 2.3: https://doi.org/10.5281/zenodo.7886545
- Tasks:
- WorkflowHub roadmap (deprecated – now managed in Trello)
- WorkflowHub implementation https://github.com/seek4science/seek/projects/3 (SEEK)
- General WorkflowHub https://github.com/workflowhub-eu/about/issues
- Mailing list:
workflowhub😊elixir-europe.org(subscribe/archive) - Slack chat: #workflows on seek4science.slack.com (join)
- Google Drive (to request write-access, ask in Slack channel)
- Slides/posters (for complete list, see Outreach):
- WorkflowHub: FAIR Workflow Registry. Justin Clark-Casey et al, EOSC Symposium 2022, 2022-11-14
- WorkflowHub – a FAIR registry for workflows. Carole Goble, ELIXIR All Hands 2022
- WorkflowHub - a registry for workflows. Carole Goble, ECCB 2020, 2020-09-02
- Poster: The WorkflowHub, a registry for Life Science Workflows. Ambarish Kumar, ISMB, 2020-07-13
- WorkflowHub Introduction slides. Carole Goble, 2020-03-25
Community
Regular meeting: WorkflowHub Club - all welcome!
Anyone is welcome to join the bi-weekly WorkflowHub Club calls using Zoom.
- When: Alternate Wednesdays 10:00 current UK time zone / 11:00 current Central European time zone
- Agenda, telcon details and minutes: https://s.apache.org/workflowhub-minutes
See the list of club members on the acknowledgement page.
Code of conduct
This project has a Code of Conduct to ensure interactions are friendly, respectful and inclusive. You can contact info@esciencelab.org.uk if you have any concerns or questions.
Citation
If you would like to reference the WorkflowHub from academic work, please cite:
Ove Johan Ragnar Gustafsson, Sean R. Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, José Mª Fernández, Tom Brown, Hervé Ménager, Björn Grüning, Salvador Capella-Gutierrez, Frederik Coppens, Carole Goble (2024):
WorkflowHub: a registry for computational workflows.
arXiv:2410.06941 [cs.DL]
https://doi.org/10.48550/arXiv.2410.06941
See also publication and outreach for more specific work.
Acknowledgements
We are grateful for contributions from EOSC-Life, ELIXIR Europe, EuroScienceGateway and others (see complete list of funders).