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Documentation: Workflow management systems (WfMS)

Galaxy

How to use Galaxy Information on how to use Galaxy can be found on the Galaxy Training Network.
Extract a workflow from a History This is the most easy way to generate a Galaxy workflow and is extensively explained here.
Editing a Galaxy workflow Using the Galaxy workflow editor it is recommended to add tags and/or add for example the tutorial title as Annotation/Notes. More information on how to use the editor can be found here in the "The workflow editor" section.
Galaxy to CWL abstract Galaxy workflows can easily be converted to CWL abstract with galaxy2cwl. This can be seen as a standardized summary of the workflow that can be interpreted by WorkflowHub. CWL abstract can also be used to generate a diagram.
Uploading to WorkflowHub Since it is not possible to reference a workflow in a Galaxy instance, you either have to download the workflow file and upload it to WorkflowHub, or make an RO-Crate following the steps below. You can still reference the workflow in the Galaxy instance using the source property in the metadata of the registration.

Workflow management systems (WfMS)

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